I was programming up a cover of a Jeff Beck tune, called Star Cycle, which has a great sequenced part in it. I had each note played as 1/16th notes, but when I hit play, they all ran together.
So, I had to redo the clip, still with a 1/16th note, but with it sub-divided into 2 steps, giving me 2 1/32nd notes for each 1/16th note. So now, each note was played for half as long, but the song still moved along at the 1/16th note pace. So, the effect was to play what sounded like truncated 1/16th notes, when really each was a 1/32nd note followed by a 1/32nd of silence.
If the above is not what is happening, perhaps you need a larger midi buffer?
Just a couple of thoughts - I hope you get your problems with this straightened out.
Bob Bone