This is one of those "might help someone" posts. I often assemble drum parts by dragging in one-shots from the browser, which can lead to a lot of tiny clips. I was dragging and copying lots of these clips to create a second verse, and accidentally let the mouse button up before the clips reached their destination. This ended up creating a whole bunch of crossfades on the tracks where the clips ended up.
Sonar went into the "infinite blue circle chasing its tail" mode, the screen turned white, and I got the "not responding" error message. I've had this happen a few times before and at this point I usually wait a bit, assume I need to reboot, and reboot.
But this time, I was really hungry so I just let it sit there while I went to get a snack. When I came back, Sonar was back to normal. To play it safe I saved, closed the project, and re-opened; everything was fine. I deleted the one-shots that ended up in the wrong location and was back to where I was originally. I don't know how long it took to return to normal, but I was away from the computer for about 15 minutes.
Normally I wouldn't mention something that just happened once, but about a year ago I had the same problem (can't recall what caused it) and again, waiting for several minutes made things right. I thought it was a freak occurrence but now that it's happened twice, I thought it might help someone save their work when the thought they were about to lose it....