It might do it automaticly. If your getting sound then all is good, otherwise you'll get a wordclock warning either from Sonar or the TC.
Best if Tascam ( Sonar) is the Master. It will also depend on if the TC supports the same clock rate you've been using to record in Sonar. I have to use 44.1 as my Yamaha 01v does not support 48 or higher.
I have a us1641 which is the same and I have used external devices and the SPDIF all the time.
Here's one way to do it, there are others.
Insert a new audio track and point it's input to the SPDIF which will show at the very bottom of the input list. Use stereo.
Now set up a bus that is pointed at the SPDIF output.
Buy adding this buss send to any track you'll be able to route the signal through the effect. The effect will be printed to the track you made. From there you can do a few things for mixdown. I assume your after harmonies.
Don't forget, you can only use the SPDIF output OR output 3/4. Cannot use both at once.