I know exactly what you're talking about, I've had this happen every now and then where the ProChannel plug-in "freezes" in a particular state. In my setup it's rare. Toggling the ProChannel's global bypass switch doesn't seem to solve the problem.
When this happens, I've been trying to save the project to send to Cakewalk for evaluation, but the good news/bad news is if I close Sonar, open it, and load the project again, everything works (the good news) so it won't be that useful to the Bakers (the bad news).
Try closing and re-opening Sonar, then calling up the project. If it opens in a failed state and this is reproducible, that would be tremendously helpful to the Bakers. So far my experience with this has been like a UFO sighting - I know I've seen it, but have no physical proof.