I don't know the Kronos and might well be missing something obvious, but the wave forms in that screen shot look very much like digital clipping caused by overloading a convertor to me.
What happens if you turn the volume of the Kronos down? Does it have it's own mixer software? If so what happens if you turn that down?
If you're recording in 24 bit aim for a peak recording level of -6 or even -12 Db.
As for using the Scarlett, a low level of hiss will almost certainly be "lost in the mix" of the finished project, especially if a bit of noise gating is done and the recording levels aren't too high. I use a variety of hardware synths through my UA 101 and the level of hiss is negligible even using unbalanced cables and analogue hardware. It can help if the synth is set as loud as the interface and recording level require so the pre-amps in the interface can be run at lower levels to get cleaner gain staging.