Well, I called up a synth patch, modified it, then froze the track. When I unfroze it, the changes I made were still there. I tried several times with various synths but couldn't reproduce the problem.
Can you provide steps?
That said...the best advice I ever got about computers was when I asked someone how often I should back up. His answer was "Whenever you've done something you don't want to lose." That advice has saved my butt many times with Windows machines.