Sorry, I was away for a bit. The easiest way to add that one is internal to X3.
Edit->Preferences-> (Advanced Mode)->File->Initialization File
In the "Option" field, enter "ProgressiveWavePictures"
In the "Value" field, enter 1
then "Set" "Apply" and close and reopen SONAR X3
Mine was not there as well, so I am "assuming" no entry means that it is defaulting to its "1" value, but not sure of this.
I just checked and that only modifies the instance in "C:\Users\Owner\AppData\Roaming\Cakewalk\SONAR X3 Producer"
Adding it to the other Cakewalk.ini file (in Program Data) required me to save it to the desktop and overwrite it as administrator.