I use
reafir for this very thing. It's a vst that does the job well of subtracting noise and it's free. I have the sony noise reduction plug with SF, but seldom use it. I used to go back and forth from Sonar (I started with Sonar 3 as well) to SF numerous times during a project for cleaning up tracks. But now I never do really. I have a shortcut key assigned to open up the
Gain command in X3 which I use for muting a click/pop or just general housekeeping when I don't want to add another vst/gate. I just select the portion of the track I want to clean, press cntrl-M in my case, and select mute from the drop down in the Gain command menu.
I still occasionally use sf to make a serious edit like replacing/duplicating a section of a clip. But I can usually swing that in X3 as well. Matter of fact, I don't think I've opened SF from the tools menu since X1 arrived. I personally just don't need to use sf like that anymore. SF is still a favorite for me to use as a mastering tool along with using it for it's great mp3 conversion. Again though, I can do all that in X3 and sometimes do.
With that said, one of my favorite feature requests I've sent is to have a dedicated audio editor tool as a part of sonar. Something like the old loop construction tool revamped for audio editing.
I think you'll really enjoy this latest version of sonar. Big step up in tools and work flow. And contrary to popular belief, the learning curve is not that bad. Lot's of the basic functions remain the same. Not all, but enough to keep you working while you learn.