Is it possible that Windows is disconnecting USB devices?
The default Windows behavior for USB devices is to selectively suspend them after some period of inactivity.
You can check/change this:
1. Control Panel\Hardware and Sound\Power Options
2. Click to select the High Performance Plan.
3. Click on Change plan settings, next to High Performance
4. Edit Plan Settings (make sure you choose the High Performance power plan).
5. I recommend you set it to never let the computer go to sleep. Then, click on Change advanced plan settings.
6. In the Power Options dialog box, expand USB Settings, then expand USB Selective Suspend and set it to Disabled.
7. Click Apply, then back you way out - if there is a button to save your plan changes do so.
While you are in the Power Options settings. I also recommend you look at and change, if need be - and if it exists for your installation of Windows, another setting. This one is under Processor Power Management, and under that within Minimum Processor State - set this to 100%, to have your CPU run at 100% all the time. This is good for Sonar performance.
So, please review and consider applying the above, and post back with results after making the changes and then loading a project and waking away for a bit - like you described in your initial post.
Thanks,
Bob Bone