Whenever I switch to a new version of Sonar, I try to leave projects from prior versions to be edited in whatever version I created them in, so for X3 there are only brand new X3 projects there.
I am not saying that is required - I just have no issues with doing things that way so I just keep doing what works.
I am on X3d, and Windows 8, but not yet on 8.1, and I almost always use only 64-bit plugins for 64-bit projects. MinimogueVA and ARP2600VA are about the only 32-bit ones I bring in - using BitBridge.
Even with that - the MinimogueVA is starting to get a little flaky - sometimes giving me BitBridge failure messages and other weirdness - so I am afraid that is going to be sent back to 32-bit Sonar only shortly.
Bob Bone