I may have missed this in the thread, so my apologies if I did. Have you tried re-installing the 64 bit X3d patch as administrator, yet?
Not an uninstall, but a simple re-install of that patch as administrator? That patch includes SONARPDR.exe, so is a simple test to try (it is possible the original patch did not install correctly).
It may be worth downloading the patch a second time as well, just in case.