Do not delete the 32-bit folder, as you may at some point need to work in 32-bit Sonar, and need access to those plugins.
I would simply not include that 32-bit plugin path to the search path for your x64 Sonar, and it will not see them and not therefore use them.
I have Komplete 8 Ultimate, and though I nearly always work in 64-bit Sonar and 64-bit Komplete plugins, there are some projects that require me to work in 32-bit Sonar, due to requirements for some 32-bit plugins that do not like running in 64-bit Sonar. I then do it all in 32-bit land.
If that never is an issue for you, then you do not need the 32-bit plugins.
Bob Bone