There's a possibility it could be plugin issue. I've heard of reports of Sonar losing plugin settings - maybe it's corrupting them in this case and crashing it.
It's a long shot (and probably a huge PITA), but what you could try is rename your plugin directories and do a re-scan to effectively remove your plugins, then load your project.
If your project loads, then you know it's one of the plugins that is causing the issue.
The time consuming part will be copying each plugin DLL back one by one to isolate the one that is causing the issue (note however, that there's a chance that it maybe affecting more then one plugin if it is a corruption issue, so make sure you've nailed down all the problem ones).