I'm not sure its "by design" but I get a region selected using Ctrl+A rather than the whole project length if I've previously had a region selected. I usually Ctrl+Shift+A and then Ctrl+A which seems to fix any region issue. It's been like that so long that it's automatic and I've never even really thought of it as a bug, just the way it works - although it could be I guess.
I definitely don't have issues with the edit filter though. If I ctrl +A it includes all clips regardless of track edit filter settings.