Well. I performed a clean install after X2 uninstall. I lost only the prochannel modules that I had to reinstall.
On X3 now I can see all of my third part plugins or instruments.
Lost only Lexicon pantheon 1 (but I own pantheon II).
According to new X3 plugins browser look, it's a good thing to re-organize a new plugin layout. You can recognize 32 bit, vst3, vst2 and this can help the production process.
Hope it helps...