Jim Roseberry
OK guys... I'm confused after reading thru these posts. 
When you're in 6/8 time, the click is *supposed* to be on 8th notes (not quarters or other subdivisions).
Six eighth note ticks per measure
X2 does exactly this...
It feels like the tempo is doubled... but it hasn't actually changed.
I think that is the OP's point. If you interpret the tempo as being set relative to the time signature, the tempo
should change when you change the time signature but keep the same tempo measured as
beats per minute. Sonar's metronome accents do change, but the overall speed of the section (measured as real time in seconds to play) does not.
If a musician were reading a metronome mark as [quarter note indicated]=60, he would interpret it that the piece should be played twice as fast as if he is reading [eighth note indicated]=60. At least he would unless he has adopted the rather strange convention noted in the roadrunner article quoted above that all tempo is always expressed as
quarter notes per minute by musicians.
Your experiment confirms that Sonar is interpreting your input into the "tempo" box as the number of quarter notes per minute and not as the number of beats per minute as shown in the musical score or followed by Sonar's metronome accent. Sonar recognizes that the note duration of a beat has changed as reflected in the measure marks in the staff view and the metronome accents, but does not adjust the speed of playback to that beat duration. That inconsistency is the source of the confusion.
Since the number you can enter in the tempo box is adjustable in a ridiculously wide range to a resolution of hundredths of the unspecified timebase (apparently a quarter note), some simple math should let you work out a usable tempo in practice.