I gotta admit, I'm totally cornfused reading this. LOL! In my experience, if I clone one of these, everything should be linked because it is is linking to the same softsynth. If I change the SS in one of them, it breaks the link on my end and that's how I'd expect it to behave...unless I'm totally missing something else? Help! lol :)
I don't like SIT's though they are cool for quickie ideas. I remember using one and I kept having to reload a sample bank every time I loaded up a project for the first time. It was driving me absolutely nuts and still happens to this day at times. The samples sound distorted, buzzy, clipped, like a razor blade is cutting them to shreds. It seems to be an NI thing. (which is where most of my issues come from) Ed (Bapu) read a post of mine where I was complaining about this. Everyone else was sort of stumped as to how/why this was happening to me. As soon as Ed saw it he said "get rid of the instrument track, Danny. They have done weird things to my projects in the past."
As soon as I did and switched back to the old way (one midi, one audio) all my problems were gone. So I don't use them anymore.
-Danny