Indeed, V-Vocal is a messy tool. It looks like a vocal editing suite, but in reality you have to slice your vocal up rather thin to get acceptable results.
If you experience "the flange" on a vowel, it's possible that V-Vocal did not automatically mute the original clip (behind it!). I've seen this bug many times. Or a clip in another take is not muted. Either way, when a slightly off-pitch line plays with a corrected on-pitch line, it gets flangey by nature.
I hope this is your issue, because it's an easy fix :)
P.S. Band name: Flangey By Nature