Use the overheads as your "core" sound. It's what gives you the bulk of everything you need. The "kit should be played" (or programmed, obviously) in a way that every element is balanced - just like when you play a piano or guitar, you try and male all the notes work together.
You can compress the overheads as you like, fast or slow settings depending on whether you want fat sounds, or pop and punch.
Then, bring in each individual close mic as needed, in order to give definition and crispness to the sound.
Don't fear the bleed, bleed is what makes a kit sound like a kit, and not individual samples. The bassdrum on it's own can lack snap, but when the snare sizzles in response to it, it adds that high frequency snap. The toms resonate with each other and with the kick, to give a fuller low-end, and so on.
If you want to go down the more heavy metal kind of sound, where there's lot more separation between kit and cymbals (typically done by raising the cymbals and hats substantially higher than normal), then you could always use two instances of the plugin, one for the shells, and another for the cymbals.