The only real option is to bounce each track individually with the source set to "Entire Mix." Duplicating all the downstream FX on the tracks themselves would be a really clunky work-around, and as you mentioned, any changes would have to be tracked across a pile of plugins.
I'm not sure what your goal is with the tracks in question, but I do this fairly regularly to bounce out tracks or stems from an existing mix for live playback. In my case, I need the downstream FX like reverbs/delays/etc. to get bounced along with the source so the tracks/stems sound as close to the studio mix as possible.
It's been mentioned, but I'll second the thought that you do need to keep an eye on bus compression when you're doing this. I never put any FX on the master, but all my tracks are always routed to buses first, which *do* get some dynamics love before going to the master.
The assumption is no matter what, you're not going to get a bus comp to respond exactly the same with an individual track versus a group. The question is *how* that compressor is being used. Is it a 20:1 squasher? Is it just a bit of glue? Depending on that context, sometimes I tweak the bus comps, sometimes I don't. So when you're bouncing your tracks, take the time to compare how your downstream bus compressors respond to one versus multiple inputs, and adjust as needed.