The size and "consistency" of trees has a lot to do with it.
Once the timber's been sawn at the timber yard it's much easier to find quarter-sawn (cut at right angles to the grain) knot and void-free sections with a good consistent grain density 4 inches thick and 8 inches wide than 2 inches thick and 14 inches wide. So you find, for example, a good-looking 4x7 block and after cutting (or splitting) and glueing the thin edges together it becomes a 2x14 body blank ready for shaping. It's even harder to find timber suitable for one piece tops on acoustic guitars, with their typically wider body.
I've heard Fender (and many far-east mass produces) might sometimes use more than just two pieces - I've seen internet claims that a Fender body "spread" might contain up to five different sections. Don't know if it's true or just "internet experts", but if it is it kind of undermines the "one piece bodies sound best" argument. Once the wood's glued it's all a single resonant plank in any case, the glue's far stronger than the wood and it's rigid so it passes vibrations no problem. Too lively body resonance is a bad thing in electric guitars in any case, as anyone who's tried to play an ES330 or similar through a cranked amp will testify.