Hi Bit,
I have an XK1 as well with a Vent. (original one.)
Through trial and error, I tweeked everything possible that's tweekable in the thing. I don't remember all the changes as I set it up a couple of years ago.
When I got the Vent, I first had to arrive at an optimal overdrive setting on it. I found there's a delicate balance to get things right within the XK1, so if you go "all drawbars out to the max", it doesn't red line the Vent. I adjusted the internal XK1 output for starters, as well as the EQ. (You can do this/ save this on any patch I believe.) Of course the internal XK1 leslie is off, but the overdrive is still on. The Vent adds "growl" which the XK1 drive sim is a little weak on. The Vent doesn't have that "sizzle" though, so I use the XK1 overdrive for that in various degrees, depending on what I'm shooting for. I find that works really well. This was part of the "delicate balance" to get it sounding the way I wanted.
I also adjusted all the vibrato/chorus settings to my liking, as the factory defaults weren't exactly what I wanted. They're quite tweekable. Again, depends on what you're shooting for. I also use the reverb on the XK1, which puts the reverb before the leslie, which is correct if you have a real Hammond/leslie setup. You can't get that dopplered (it that a word?) reverb effect any other way.
It took awhile to get things the way I wanted. (think ELP - Tarkus as one example.) I played around with different percussion tweeks, key click, you name it. It all affects the output and overdrive of both the XK1 and the Vent. I don't know if there's a "magical" tweek per se, as everyone has their own preferences for a Hammond sound. More like a lot of programming and experimentation to get it the way you want it.
Don't know if any of this helps you, other than to say that it took some time and attention via experimentation to get it right. It can be done though...and as much as I agree that VB3 sounds really good, there's something about the XK1/Vent that sounds a a little more detailed, open and pleasing to me.