Well, I use MS Expression which is old software that you can choose the audio input for (and the rme inputs show up). I don't think they still support or sell this software.
I can also select and record RME inputs with CamStudio. I can select Audio > Options and pick an input from the RME.
Alternatively, if you really can't capture audio with the video capture, you could sync up a mouse movement (like move the mouse to the lower right hand corner twice and tap the desk each time and sync the taps to the mouse movement.
For me, I always capture the audio on outputs 7+8 as the stereo pair for the recording. I also send the Sonar Mains to 5+6 (and also route to 7+8 so I can hear them using totalmix). Then, I set 5+6 for loopback and record 1 (my talking), 5+6 - full strength Sonar Output so you get real time fader movements and stuff the way they happen), and 7+8 (which has Sonar out mixed with my vocal as I heard it during the performance of the video recording).
When I'm done, I can input as separate tracks
- the stereo pair output from Sonar (5+6).
- My voice
- the mixture of my voice and Sonar (7+8)
- The stereo pair as captured by the video capture.
Now, DigiCheck + Sonar + Video Capture device all linking to your RME can get interesting, but in my experience DigiCheck always wins with the smooth recording. DigiCheck has never enabled some other audio program to mess up the DigiCheck recording. On the other hand, sometimes I get pops and clicks through the Microsoft Expression input.
See this video...
https://www.youtube.com/watch?v=d6Lqj6-j05Q You can see me start talking - before I remember to start recording with digicheck. I notice at 40 secs that I'm not yet recording with digicheck and you hear pops and clicks for those first few secs then no more pops and clicks b/c digicheck is on.