For instance, it flatly doesn't work on the first channel strip on some of my projects.
I solved this mystery!! I use the transports on several of my MIDI devices...like my trusty old VM-3100 Pro, controller keyboard and some MIDI pedals. To do this, I set the MIDI "Shift key" parameter to the lowest note, C0. Turns out the VS-700C uses that particular MIDI note to control the ARM function on the first channel strip. Other notes play nice, but due to the way the "shift key" works it gets nixed.
I'm not sure what the work-around will be, other than selecting another note for the shift key (and running the risk of killing another function on the console). Maybe the very tippy-top high C. I could use a CC message instead, but I think the VM-3100 can only send notes. Maybe it's time to give up on the VM-3100 transport, anyway, since I don't really NEED that old thing, with this big beautiful VS-700C sitting in front of me. But I do need the other transports for remote control while tracking.
ANYWAY...
So that just leaves the one issue with ARMing Instrument Tracks, which appears to be a known bug. For that, I guess we just wait and see...