If you're close micing there's nothing you can do about phase on any spill. The aim of close micing is to remove as much spill as you can, thus reducing phase problems.
Phase becomes an issue where you're using two or more mics for the same sound source, ie. overheads, snare, kick. and you should really only worry about those.
For overheads, distance to the sound source is the main factor. You can mic an entire kit with just a kick mic and single overhead. Add a second overhead to give stereo width and the phase comes into play. You solve this by keeping the overheads at the same distance from the snare (which places it in the middle) and pointing at it. Make an even triangle from the snare and overheads, so if the mics are 5 feet from the snare, place them 5 feet apart. Phase differences from the other kit pieces now work in your favour providing most of the stereo position information.
For snare and kick, you generally need the top/bottom (or front/back on a kick) mics to be out of phase with each other. BUT, it depends on the mics and their distance from the drum. If snare top is close and snare bottom is on a small stand at floor level you may NOT need to reverse the phase. Same for front/back micing a kick drum. As I always end up saying... use your ears!! Press the phase button, if it sounds worse press it again...
After recording you can perfectly phase match pairs of instrument mics by sliding one of the clips until the transients line up. But you should only do this for mics on the same kit piece, and you should move the clip for the mic with the lowest spill.