sure... this is what i did, hope it works for you.
step 1- go into all cakewalk folders on your C Drive/Programs, or Programs (x86) for 32 bit version/Cakewalk/Shared Utilities/Internal and delete ALL pro channel .dlls
Step 2- open sonar x3 and run a vst scan to verify all pro channel fx are gone.
Step 3- get out your original installer files, disk or download and only install program files and plugin fx.
step 4- install x3E update.
step 5- open sonar x3 again and run another vst scan to verify the pro channel plugins are there again.
Last- open a test project, change pro channel eq drastically, save and reopen to see if it fixed it for you.
it worked for me... it reminds me of vst effects getting buggy and having to delete them and reinstall them.
hope this works you. let me know.