First, I have honestly say whether manually installed or using the Command Center Verbose mode (which I only experimented with to see what it did- then I go back to 100% manual) Sonar does installs everything (well most- but not 100%) I tell to install on my D:\ drive.
So if you have ALL of Sonar installing on your C drive, even if you instructed it to install on some other drive then you have an issue. Maybe becasue you previously installed all the Cakewalk "Shared" folders, Project folders, etc., to C drive? Because, in that case CW WILL install that same named stuff there again (that's why those items are "grayed out" during install).
But even on a first time, brand new, 100% clean install of full Sonar to a new, non-C drive, CW will still install a lot of stuff on the C drive, read on.
I have always installed all music apps (notation SW, DAW's, all Native Instrument Komplete, IK stuff, UVI, Presonus, XLN, iZoptope, MOST plugins, etc. ) on my D:\ drive. I've been running multiple internal drive systems (now 6 drives) since around late Win 98.
But with Microsoft Vista OS (around Sonar 7? I can't remember version), MOST of Sonar was was installed on C drive no matter where I/you told it to install - becasue MS insisted programs and related should be installed in the C:\Program Files and C: \Program Data folders on C starting in Win Vista.
But with Win XP and Sonar 8, Cakewalk again installed MOST stuff on my D:\ drive (as directed). However, it still installs a lot of stuff on the C drive, almost all could just as easily be put where it is told at installation since, the Registry knows where that is.
Worse, some of it is REDUNDANTLY on the C: drive (C:\Users\your name\Local Apps\Roaming\Cakewalk\; C:\users\All users; C:\Program Data\ ; C:\Program Files (x86) and C:\Program Files\) and some of it is not small liek a shortcut, some are things like Studio Instruments and Dim Pro with multi-sample folders, etc. (that requires me moving the folders and then editing Registry to point it to my D drive, PITA!)
CW needs to go back and really CLEAN up this confusing install mess at some point, there is technically no need to have anything, except the shortcut to the executable, on the C drive. Unless, of course, I tell it to install "this" or "that" on the C drive (maybe you really do want 100% on C drive, or your Projects Folders and Studio Instruments on C, etc.).