Many moons ago there were some issues with Waves plugins specific to Sonar - namely, that some of their GUI's would not play nice. Supertap, for example, had horrible controls which would "spring back" when you set them. Both companies recognized the problem and if I remember rightly, they were in contact with each other to come up with a fix.
Recently I've been experiencing similar issues with laggy/jerky control knobs,
clicks and pops (in their Element 2 synth, even when my overall CPU activity is moderate) and I have just discovered this morning that Sonar has been nuking all of my SSL E-Channel settings back to default in a project.
So I was wondering if these issues were being experienced by others, if so I would draw it to Cakewalk's attention (and maybe Waves too) so we can see about maybe getting them sorted out.