Bramwill:
I love the Alesis QS series synths. I have an original QS8 and the sounds are fabulous.
I made this post a long time ago to help someone set up their QS8 so that they could choose the QS patches on the MIDI tracks in Sonar, play on the QS8, record the MIDI in Sonar and hear/record the sounds on the QS8. (I don't even remember what version of Sonar I was on at the time so the menu items/dialogs may be different.)
Here's a
pointer to the post. It doesn't talk about recording the audio, but I believe you would just run the audio signal out of the QS and into the MOTU, then record the audio into audio tracks in Sonar.
Check it out and see if this helps you,
Paul