Sound on Sound MIDI recording should be working as expected - hearing all takes during and after recording. Double-check the record mode, as it's per-project, and having set it in one project won't change how other projects or templates behave. Also, if you have punch enabled as well, make sure it's not set to Mute Previous Takes as this will override the default behavior of the record mode.
EDIT: Just remembered there's an issue with Input Quantizing that will cause some or all notes from earlier takes not to be played back while recording, but that issue goes back several some versions and would not affect playback after recording stopped.